Publications

Found 18 results

Filters: Author is Udupi A Ramagopal [Clear All Filters]

2018

G. C. Pavithra and Ramagopal, U. A., “Crystal structures of APRT from Francisella tularensis: An N-HLN hydrogen bond imparts adenine specificity in adenine phosporibosyltransferases”, FEBS, 2018.

A. Ghosh, Ramagopal, U. A., Bonanno, J. B., Brenowitz, M. D., and Almo, S. C., “Structures of the L27 domain of Disc Large homolog 1 protein illustrate a self-assembly module”, Biochemistry, vol. 57, no. 8, 2018.

2017

D. Samanta, Guo, H., Rubinstein, R., Ramagopal, U. A., and Almo, S. C., “Structural, mutational and biophysical studies reveal a canonical mode of molecular recognition between immune receptor TIGIT and nectin-2”, Molecular Immunology, vol. 81, 2017.

2016

W. Liu, Ramagopal, U. A., Cheng, H., Bonanno, J. B., Toro, R., Bhosle, R., Zhan, C., and Almo, S. C., “Crystal structure of the complex of human FasL and its decoy receptor DcR3”, Structure, vol. 24, 2016.

E. E. McClelland, Ramagopal, U. A., Rivera, J., Cox, J., Nakouzi, A., Prabu, M. M., Almo, S. C., and Casadevall, A., “A Small Protein Associated with Fungal Energy Metabolism Affects the Virulence of Cryptococcus neoformans in Mammals”, PLoS Pathog, vol. 12, p. e1005849, 2016.

2014

H. Jeon, Vigdorovich, V., Garrett-Thomson, S. C., Janakiram, M., Ramagopal, U. A., Abadi, Y. M., Lee, J. Sik, Scandiuzzi, L., Ohaegbulam, K. C., Chinai, J. M., and , O., “Structure and cancer immunotherapy of the B7 family member B7x”, Cell reports, vol. 9, pp. 1089–1098, 2014.

T. Bhowmick, Ghosh, S., Dixit, K., Ganesan, V., Ramagopal, U. A., Dey, D., Sarma, S. P., Ramakumar, S., and Nagaraja, V., “Targeting Mycobacterium tuberculosis nucleoid-associated protein HU with structure-based inhibitors”, Nature communications, vol. 5, 2014.

2013

R. Rubinstein, Ramagopal, U. A., Nathenson, S. G., Almo, S. C., and Fiser, A., “Functional classification of immune regulatory proteins”, Structure, vol. 21, pp. 766–776, 2013.

K. D. Daughtry, Huang, H., Malashkevich, V., Patskovsky, Y., Liu, W., Ramagopal, U. A., J Sauder, M., Burley, S. K., Almo, S. C., Dunaway-Mariano, D., and , O., “Structural basis for the divergence of substrate specificity and biological function within HAD phosphatases in lipopolysaccharide and sialic acid biosynthesis”, Biochemistry, vol. 52, pp. 5372–5386, 2013.

V. Vigdorovich, Ramagopal, U. A., Lazar-Molnar, E., Sylvestre, E., Lee, J. Sik, Hofmeyer, K. A., Zang, X., Nathenson, S. G., and Almo, S. C., “Structure and T cell inhibition properties of B7 family member, B7-H3”, Structure, vol. 21, pp. 707–717, 2013.

U. A. Ramagopal, Dulyaninova, N. G., Varney, K. M., Wilder, P. T., Nallamsetty, S., Brenowitz, M., Weber, D. J., Almo, S. C., and Bresnick, A. R., “Structure of the S100A4/myosin-IIA complex”, BMC structural biology, vol. 13, p. 1, 2013.

2012

B. P. Warlick, Evans, B. S., Erb, T. J., Ramagopal, U. A., Sriram, J., Imker, H. J., J Sauder, M., Bonanno, J. B., Burley, S. K., F Tabita, R., and , O., “1-Methylthio-D-xylulose 5-phosphate methylsulfurylase: A novel route to 1-deoxy-D-xylulose 5-phosphate in Rhodospirillum rubrum”, Biochemistry, vol. 51, pp. 8324–8326, 2012.

D. Samanta, Ramagopal, U. A., Rubinstein, R., Vigdorovich, V., Nathenson, S. G., and Almo, S. C., “Structure of Nectin-2 reveals determinants of homophilic and heterophilic interactions that control cell–cell adhesion”, Proceedings of the National Academy of Sciences, vol. 109, pp. 14836–14840, 2012.

2011

C. Zhan, Patskovsky, Y., Yan, Q., Li, Z., Ramagopal, U. A., Cheng, H., Brenowitz, M., Hui, X., Nathenson, S. G., and Almo, S. C., “Decoy strategies: the structure of TL1A: DcR3 complex”, Structure, vol. 19, pp. 162–171, 2011.

D. Samanta, Mukherjee, G., Ramagopal, U. A., Chaparro, R. J., Nathenson, S. G., DiLorenzo, T. P., and Almo, S. C., “Structural and functional characterization of a single-chain peptide–MHC molecule that modulates both naive and activated CD8+ T cells”, Proceedings of the National Academy of Sciences, vol. 108, pp. 13682–13687, 2011.

E. Lazar-Molnar, Ramagopal, U. A., Almo, S., and Nathenson, S., “Structural and functional studies on PD-1: from crystals to mice (63.17)”, The Journal of Immunology, vol. 186, pp. 63–17, 2011.

2010

V. N. Malashkevich, Dulyaninova, N. G., Ramagopal, U. A., Liriano, M. A., Varney, K. M., Knight, D., Brenowitz, M., Weber, D. J., Almo, S. C., and Bresnick, A. R., “Phenothiazines inhibit S100A4 function by inducing protein oligomerization”, Proceedings of the National Academy of Sciences, vol. 107, pp. 8605–8610, 2010.

D. R. Brims, Qian, J., Jarchum, I., Mikesh, L., Palmieri, E., Ramagopal, U. A., Malashkevich, V. N., Chaparro, R. J., Lund, T., Hattori, M., and , O., “Predominant occupation of the class I MHC molecule H-2Kwm7 with a single self-peptide suggests a mechanism for its diabetes-protective effect”, International immunology, vol. 22, pp. 191–203, 2010.